# circos_cri-interests-marmod.conf

karyotype = CRI-karyotype+interests-marmod.txt

# below are the outset sections which I'm not going to do yet
# They  also have to be defined in the karyotype file

chromosomes_radius =  brain:1.02r,skin:1.02r,blood:1.02r,breast:1.02r,immune:1.02r,intest:1.02r,lung:1.02r,stem:1.02r,prost:1.02r,tumoruv:1.02r,metast:1.02r,cellsignal:1.04r,metab:1.04r,biomark:1.04r,dnarepair:1.04r,virol:1.04r,obes:1.04r,rnabio:1.04r,epigen:1.04r,tools:1.04r

<links>

################## New collaborations 
<link>
file = interests.marmod+counts.links
radius = 0.97r
bezier_radius = 0.3r
# color is set in the link  file itself, but this would make the 
thickness = 3
#ribbon = yes
flat = yes
</link>

</links>

<ideogram>

<spacing>
default = 0.0005r
</spacing>

radius    = 0.65r
thickness = 150p
fill      = yes

show_label = yes
label_font = bold
label_size = 40
label_case = upper
label_radius = 1r + 50p
label_parallel = no
label_color = lyellow

</ideogram>

background = black

# <backgrounds>
# show  = data
# color = black
# </backgrounds>


################################################################
# The remaining content is standard and required. It is imported 
# from default files in the Circos distribution.
#
# These should be present in every Circos configuration file and
# overridden as required. To see the content of these files, 
# look in etc/ in the Circos distribution.

<image>
# Included from Circos distribution.
<<include etc/circos/image.conf>>
</image>

# RGB/HSV color definitions, color lists, location of fonts, fill patterns.
# Included from Circos distribution.
<<include etc/circos/colors_fonts_patterns.conf>>

# Debugging, I/O an dother system parameters
# Included from Circos distribution.
<<include etc/circos/housekeeping.conf>>
#track_defaults* = undef