# circos.conf
karyotype = CRI-karyotype+interests.txt
#below are the outset sections which I'm not going to do yet
#They would also have to be defined in the karyotype file
#chromosomes_radius = dq1:1.1r,dq2:1.1r,dq3:1.1r,dq4:1.1r
chromosomes_radius = Skin:1.02r,BldCan:1.02r,BrstCan:1.02r,Stem:1.02r,Wnt:1.02r,MitMet:1.02r,CanMet:1.02r,NovThe:1.02r,ProCan:1.02r,Kinase:1.02r,Immuno:1.02r,Imagng:1.02r,ColCan:1.02r,Radn:1.02r,BioMrk:1.02r,DNA:1.02r,Vir:1.02r,CanBio:1.02r,Signal:1.02r,Diabet:1.02r,RNA:1.02r,Epigen:1.02r,Metast:1.02r
#################### Interests
file = interests.links
radius = 0.97r
bezier_radius = 0.3r
#color = purple
thickness = 4
#ribbon = yes
flat = yes
condition = 1
z = eval(int(max(var(size1),var(size2))/100))
default = 0.0005r
radius = 0.55r
thickness = 150p
fill = yes
show_label = yes
label_font = bold
label_size = 40
label_case = upper
label_radius = 1r + 50p
label_parallel = no
label_color = lyellow
background = black
#
# show = data
# color = black
#
################################################################
# The remaining content is standard and required. It is imported
# from default files in the Circos distribution.
#
# These should be present in every Circos configuration file and
# overridden as required. To see the content of these files,
# look in etc/ in the Circos distribution.
# Included from Circos distribution.
<>
# RGB/HSV color definitions, color lists, location of fonts, fill patterns.
# Included from Circos distribution.
<>
# Debugging, I/O an dother system parameters
# Included from Circos distribution.
<>
#track_defaults* = undef