Tue Sep 17 07:08:44 [0.11 0.11 0.07] root@hpc-s:~ 1311 $ module avail ----------------------------- /data/modulefiles/SOFTWARE ----------------------------- 454/2.8 cplex/studio-1.2.4 netcdf-4.1.3/pgi-12.6 7zip/9.20.1 cufflinks/2.0.2 neuron/7.1 Bertini/1.4 cufflinks/2.1.1 neuron/7.2 Blat desmond/3.1 neuron/7.3 CLHEP/2.1.3.1 dssp/2.0.4 novocraft/1.0 Cluster_Defaults dwgsim/0.1.10 oases/0.2.6 GE edena/2.1.1 opensees/2.2.2 GenomeBrowse/1.1.0 edena/3.120625-BETA pbwa/0.5.9-1.21009 IzPack/4.1.1 elk/3.99.8 pemer/1.0 IzPack/4.3.5 emboss/6.5.7 pemer/module.skeleton MATLAB/backup ensembl/Jan13 penncnv/2011Jun16 MATLAB/r2011b enthought_python/7.3.2 perl/5.16.2 MCMCcoal/2a erds/1.07 perm/0.4 MUMmer/3.23 erds/1.1 phast/1.2.1 Mathematica/8.0.0 exonerate/2.2 phenix/1.8.2 Minuit2/5.28.00 express/1.2.1 picard-tools/1.87 MrBayes/3.1.2 express/1.2.2 picard-tools/1.96 MrBayes/3.2.1 express/1.3.0 pigz/2.2.4 NAMD-ibverbs/2.8 express/1.4.0 pindel/0.2.4q NAMD-ibverbs/2.9 fastqc/0.10.1 plink/1.07 NAMD-multicore/2.8 fastx-tools/0.0.13 plinkseq/0.08 NAMD-multicore/2.9 fftw/2.1.5 popoolation2/1201 NAMD-multicore-CUDA/2.8 fftw/3.3 protobuf/2.2.0a NAMD-multicore-CUDA/2.9 fftw/3.3.3-openmp python/2.7.2 NAMD-source/ibverbs/2.9 filezilla/3.3.5 python/3.2.2 NAMD-source/multicore/2.9 formulize/0981 quest/2.4 NAMD-test/2.9 freesurfer/5.1.0 ray/1.7 PETSc/3.4 freesurfer/5.3.0 readline/6.2 PhyML/20120412 fsl/5.0.2 recon/1.70 R/2.14.0 galaxy-server repeatmasker/3.3.0 R/2.14.2 gapcloser/20100125 repeatscout/1.0.5 R/2.15.0 gatk/1.6-5 retroseq/1.41 R/2.15.1 gatk/2.4-7 retroseq/20130813git R/2.15.2 gatk/2.5-2 rmblast/1.2 R/3.0.1 gatk/2.6-5 rna-seqc/1.1.7 RUbioSeq/3.2.1 geant4/9.6 robina/1.2.3 Ray/2.1.0 gephi/0.8.2 rseqc/2.3.2 RevolutionR/5.0.1 ghmm/0.9-rc1 rseqtools/0.6 SRAToolKit/2.3.1 gnu_parallel/20120222 samstat/1.08 SRAToolKit/2.3.2-5 gnuplot/4.6.0 samtools/0.1.18 SVMerge/1.2r37 gnuplot/4.6.3 samtools/0.1.18-new Telescoper/1.0 grace/5.1.22 samtools/0.1.18.orig VariationHunter/0.04 gri/2.12.23 samtools/0.1.19 abyss/1.3.2 gromacs/4.5.5 sas/9.3 allpathslg/46813 gromacs/4.6-amd savant/2.0.3 amos/3.1.0 gromacs/4.6-intel screed/0.9 anfo/0.98 gromacs/4.6.1-openmp sfs_code/20130124 annovar/2012Mar08 gsl/1.15 signalp/4.1 annovar/2012Oct23 gsl/1.16 simset/2.9.1 annovar/2013Jul28 gzstream/1.5 smalt/0.7.3 annovar/2013Jul30 hdf5/1.8.10 smartx/1.0 ants/1.9v4 hdf5/1.8.11 snpEff/3.2 atlas/3.10.0 hdf5/1.8.8 soap/2.20 augustus/2.6.1 hdf5/1.8.9 sparsehash/2.0.2 bamtools/2.1.1 hlrdhm/3.2.1 sqlite/3.7.11 beagle-lib hmmer/3.0 ssaha2/2.5.5 beast/1.7.4 hmmer/3.0-intel ssc/0.6 beast/1.7.5 hobbes/1.5 staden/2.0.0b9 bedtools/2.15.0 homer/4.2 stampy/1.0.17 bfast/0.7.0a hopspack/2.0.2 stampy/1.0.20 bionetgen/2.2.0 hopspack/source-2.0.2 stata/11 blasr/20130514 hotspot/3.0 stata/13 blast/2.2.28 hyphy/2.1.2 stir/2.4 boost/1.49.0 igv/2.0.34 subversion/1.7.4 boost/1.53.0 impute2/2.3.0 szip/2.1 boost/1.53.0_gcc-4.2.1 infernal/1.1rc2 tacg/4.6.0 boost/1.54.0 interviews/17 tcl/8.5.11 bowtie/0.12.7 interviews/18 tcl/8.5.5 bowtie/0.12.8 khmer/20130813 tk/8.5.11 bowtie2/2.0.2 lammps/20130713-3ak tk/8.5.5 bpipe/0.9.7 mach/1.0.18 tmhmm/2.0 breakdancer/1.1.2 macs/1.4.2 tophat/1.4.0 bwa/0.5.9 macs2/2.0.10 tophat/2.0.4 bwa/0.6.2 maq/0.7.1 tophat/2.0.5 bwa/0.7.3a mats/3.0.7b tophat/2.0.6 bwa/0.7.5a meme/4.9.0_4 trinity/20130216 byobu/5.22 metis/4.0.3 trinity/r2012-06-08 byobu/5.41 metis/5.0.2 trinotate/1.0 cdbfasta/0.99 miRExpress/2.1.4 varscan/2.3.5 cern_root/5.34.09 miRNAkey/1.2 vcftools/0.1.9 cgatools/1.7.1.5 mirdeep2/2.0.0.5 velvet/1.2.03 circos/0.63-4 miso/0.4.7 velvet/1.2.08 clearcut/1.0.9 module.skeleton vmd/1.9.1 clippers/0.0.9 mono/2.11.4 wgs/7.0 cnD/1.4 mosaik/1.1.0018 zlib/1.2.5 cnv-seq/1.0 muscle/3.6 zlib/1.2.7 cnver/0.8.1 netcdf/4.1.3 comsol/4.3b netcdf/4.2.1.1-share-gcc ---------------------------- /data/modulefiles/COMPILERS ----------------------------- acml/gfortran/5.1.0 gcc/4.3.3 intel-mkl/12.0.5 acml/gfortran/mp/5.1.0 gcc/4.4.3 java/1.6 acml/ifort/5.1.0 gcc/4.6.2 java/1.7 acml/ifort/mp/5.1.0 gcc/4.6.3 llvm/3.1 acml/open64/5.1.0 gcc/4.7.0 mpc/0.9 acml/open64/mp/5.1.0 gcc/4.7.1 mpc/1.0.1 acml/pgi/5.1.0 gcc/4.7.2 mpfr/3.1.0 acml/pgi/mp/5.1.0 gcc/4.7.3 mpfr/3.1.1 binutils/2.22 gcc/4.8.0 mpfr/3.1.2 binutils/2.23.1 gcc/4.8.1 open64/5.0 binutils/2.23.2 gdb/7.5 pgi/12.10 cmake/2.8.10.2 gdb/7.5.1 pgi/12.4 cmake/2.8.8 gmp/4.2.2 pgi/12.6 cuda/4.2 gmp/4.3.2 pgi/13.1 cuda/5.0 gmp/5.0.2 pgi/13.4 dragonegg/3.1 gmp/5.0.5 pgi/5.2 g95/0.92 gmp/5.1.1 totalview/8.11 gcc/4.2.1 gmp/5.1.2 gcc/4.2.3 intel/12.0.5 ------------------ /data/modulefiles/MPI-MESSAGE_PASSING_INTERFACE ------------------- mpich-1.2.7/gcc-4.7.2 openmpi-1.4.4/gcc-4.7.2 openmpi-1.6.0/intel-12.0.5 mpich-1.2.7/pgi-13.4 openmpi-1.4.4/intel-12.0.5 openmpi-1.6.0/open64-5.0 mpich-1.2.7/pgi-5.2 openmpi-1.4.4/pgi-12.6 openmpi-1.6.3/gcc-4.4.6 mpich-1.2.7/pgi-5.2-32bit openmpi-1.6.0/gcc-4.6.3 openmpi-1.6.3/gcc-4.7.2 mpich-3.0.4/gcc-4.8.1 openmpi-1.6.0/gcc-4.7.2 openmpi-1.6.5/gcc-4.7.3 mpich2-1.4.1/gcc-4.7.2 openmpi-1.6.0/gcc-4.7.3 openmpi-1.4.4/gcc-4.6.3 openmpi-1.6.0/gcc-4.8.0